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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
94
ChIP-seq
6
WGBS
1
RRBS
Assay category
248
Transcription
94
DNA binding
DNA accessibility
7
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
59
September, 2018
54
August, 2017
48
July, 2018
38
April, 2018
38
September, 2020
18
February, 2021
9
November, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
491
bigWig
475
bam
349
fastq
258
tsv
214
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
45
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
Organism
349
Homo sapiens
Biosample type
427
cell line
349
primary cell
336
tissue
140
in vitro differentiated cells
4
stem cell
Organ
226
pancreas
206
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
217
AMP
132
HPAP
Genome assembly (visualization)
203
hg19
197
GRCh38
Lab
217
AMP-T2D consortium
132
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
eye
vein
BIOSAMPLE
ASSAY
349 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
WGBS
RRBS
primary cell
pancreatic alpha cell
12
52
13
6
pancreatic beta cell
12
21
13
exocrine cell
39
Langerhans cell
34
pancreatic ductal cell
9
4
13
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