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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
total RNA-seq
100
single cell RNA-seq
2
small RNA-seq
Assay category
251
Transcription
DNA accessibility
Target of assay
3
control
Date released
52
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
Available data
504
bigWig
493
bam
331
fastq
251
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
9
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
251
Homo sapiens
Biosample type
623
tissue
251
primary cell
109
in vitro differentiated cells
40
cell line
4
stem cell
Organ
110
epithelium
102
pancreas
14
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
155
AMP
96
T1D
Genome assembly (visualization)
251
GRCh38
251
hg19
Lab
155
AMP-T2D consortium
96
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
February, 2021
BIOSAMPLE
ASSAY
251 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
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