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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
155
total RNA-seq
102
single cell RNA-seq
17
pCHi-C
10
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
262
DNA binding
259
Transcription
DNA accessibility
11
DNA methylation
5
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
109
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
59
September, 2018
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
June, 2019
9
November, 2017
9
October, 2019
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
March, 2023
1
November, 2018
Available data
493
bigWig
478
bam
252
tsv
217
fastq
216
bed narrowPeak
100
tagAlign
47
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
1
hic
Organism
554
Homo sapiens
Biosample type
2307
tissue
631
cell line
554
primary cell
351
in vitro differentiated cells
10
stem cell
Organ
212
epithelium
172
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
357
AMP
196
T1D
1
ITG
Genome assembly (visualization)
504
hg19
450
GRCh38
Lab
322
AMP-T2D consortium
231
Kyle Gaulton, UCSD
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
lab.title!
Klaus Kaestner, Upenn
month_released!
January, 2021
organ_slims!
vein
BIOSAMPLE
ASSAY
554 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
CD8-positive, alpha-beta T cell
33
4
1
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
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