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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
102
single cell RNA-seq
57
total RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
DNA accessibility
162
DNA binding
161
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
59
September, 2018
54
August, 2017
48
July, 2018
43
April, 2018
31
July, 2019
31
June, 2019
27
October, 2019
9
November, 2017
7
May, 2021
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
February, 2021
2
May, 2020
2
October, 2018
1
March, 2020
1
November, 2018
Available data
315
bam
290
bigWig
217
fastq
156
tsv
112
bed narrowPeak
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
4
hdf5
2
csv
2
hic
1
bedpe bed3+
Organism
341
Homo sapiens
Biosample type
2109
tissue
584
cell line
341
primary cell
307
in vitro differentiated cells
8
stem cell
Organ
212
epithelium
172
pancreas
30
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
341
AMP
Genome assembly (visualization)
303
hg19
279
GRCh38
Lab
341
AMP-T2D consortium
231
Kyle Gaulton, UCSD
153
Klaus Kaestner, Upenn
1
ITG
Audit category:
34
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
May, 2022
BIOSAMPLE
ASSAY
341 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
13
12
10
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
10
4
pancreatic acinar cell
8
12
4
pancreatic endocrine cell
23
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