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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
245
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
DNA accessibility
254
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
218
histone
218
histone modification
111
broad histone mark
107
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
June, 2019
27
July, 2019
20
February, 2021
9
October, 2019
6
November, 2017
5
December, 2019
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
482
bigWig
468
bam
346
fastq
256
tsv
210
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
41
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
Organism
769
Homo sapiens
Biosample type
2152
tissue
769
primary cell
573
cell line
351
in vitro differentiated cells
10
stem cell
Organ
310
epithelium
275
pancreas
31
connective tissue
30
vasculature
blood vessel
19
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
345
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
496
hg19
442
GRCh38
Lab
310
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
August, 2020
May, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
769 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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