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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
266
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
231
histone
231
histone modification
121
broad histone mark
110
narrow histone mark
31
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
June, 2019
27
October, 2019
20
February, 2021
November, 2017
5
December, 2019
5
May, 2019
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
493
bigWig
482
bam
340
fastq
258
tsv
217
bed narrowPeak
96
tagAlign
93
zippedFastqFolder
51
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
787
Homo sapiens
Biosample type
2066
tissue
787
primary cell
321
in vitro differentiated cells
272
cell line
10
stem cell
Organ
305
epithelium
275
pancreas
31
connective tissue
24
kidney
24
vasculature
23
blood vessel
19
vein
13
musculature of body
10
heart
7
brain
7
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
363
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
509
hg19
451
GRCh38
Lab
328
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
August, 2021
November, 2017
BIOSAMPLE
ASSAY
787 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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