Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
244
total RNA-seq
175
single cell RNA-seq
41
WGBS
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
421
Transcription
279
DNA binding
DNA accessibility
52
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
June, 2019
29
July, 2019
27
October, 2019
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
502
bigWig
491
bam
331
fastq
249
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
9
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
778
Homo sapiens
Biosample type
1738
tissue
778
primary cell
544
cell line
329
in vitro differentiated cells
10
stem cell
Organ
309
epithelium
269
pancreas
30
vasculature
29
connective tissue
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
372
AMP
209
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
517
hg19
457
GRCh38
Lab
337
AMP-T2D consortium
231
Kyle Gaulton, UCSD
209
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
February, 2021
organ_slims!
artery
BIOSAMPLE
ASSAY
778 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
25
1
Langerhans cell
73
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
+ See 79 more…
See all biosamples
Download