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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
187
single cell RNA-seq
169
total RNA-seq
47
WGBS
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
358
Transcription
DNA accessibility
255
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
June, 2019
October, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
485
bigWig
469
bam
273
fastq
256
tsv
210
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
47
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
697
Homo sapiens
Biosample type
2071
tissue
697
primary cell
597
cell line
343
in vitro differentiated cells
10
stem cell
Organ
251
epithelium
238
pancreas
31
connective tissue
16
brain
15
kidney
13
musculature of body
12
vasculature
11
liver
10
heart
8
blood vessel
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
349
AMP
196
T1D
151
HPAP
1
ITG
Genome assembly (visualization)
500
hg19
442
GRCh38
Lab
314
AMP-T2D consortium
231
Kyle Gaulton, UCSD
151
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
February, 2023
October, 2019
BIOSAMPLE
ASSAY
697 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
Langerhans cell
85
pancreatic alpha cell
13
12
25
31
1
pancreatic beta cell
13
12
11
16
1
CD8-positive, alpha-beta T cell
33
4
1
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