Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
187
total RNA-seq
184
single cell RNA-seq
47
WGBS
17
pCHi-C
6
Hi-C
1
DNAme array
1
RRBS
Assay category
371
Transcription
279
DNA binding
DNA accessibility
49
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
May, 2020
43
April, 2018
July, 2019
31
June, 2019
27
October, 2019
20
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
438
bigWig
432
bam
349
fastq
226
bed narrowPeak
195
tsv
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
6
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
722
Homo sapiens
Biosample type
2045
tissue
722
primary cell
630
cell line
351
in vitro differentiated cells
10
stem cell
Organ
302
epithelium
275
pancreas
25
vasculature
23
connective tissue
22
blood vessel
19
vein
17
kidney
10
musculature of body
9
brain
9
liver
5
heart
3
eye
1
bone element
1
bone marrow
Project
343
AMP
227
HPAP
151
T1D
1
ITG
Genome assembly (visualization)
445
hg19
397
GRCh38
Lab
308
AMP-T2D consortium
227
Klaus Kaestner, Upenn
186
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
July, 2019
May, 2020
BIOSAMPLE
ASSAY
722 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
DNAme array
RRBS
primary cell
monocyte
85
52
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
+ See 48 more…
See all biosamples
Download