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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
Assay category
96
DNA binding
Target of assay
201
histone
201
histone modification
105
broad histone mark
96
narrow histone mark
23
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
June, 2019
3
October, 2019
2
August, 2021
1
May, 2019
1
November, 2017
Available data
94
bigWig
86
bed narrowPeak
84
bam
47
tagAlign
38
fastq
8
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
2
bed bed3+
Organism
96
Homo sapiens
Biosample type
306
tissue
96
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
33
epithelium
31
pancreas
vasculature
7
blood vessel
6
vein
4
kidney
3
brain
2
liver
Project
56
AMP
40
T1D
Genome assembly (visualization)
94
hg19
84
GRCh38
Lab
50
Kyle Gaulton, UCSD
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
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