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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
187
single cell RNA-seq
135
ChIP-seq
47
WGBS
9
RRBS
6
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
379
Transcription
DNA accessibility
135
DNA binding
56
DNA methylation
6
3D chromatin structure
Target of assay
102
histone
102
histone modification
55
narrow histone mark
47
broad histone mark
28
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
June, 2019
26
July, 2019
20
February, 2021
9
October, 2019
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
343
fastq
334
bam
312
bigWig
204
tsv
98
bed narrowPeak
93
zippedFastqFolder
43
bigBed narrowPeak
16
tagAlign
15
bed broadPeak
15
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
bed bed3+
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
Organism
577
Homo sapiens
Biosample type
2177
tissue
577
primary cell
568
cell line
224
in vitro differentiated cells
10
stem cell
Organ
315
epithelium
275
pancreas
30
connective tissue
vasculature
26
blood vessel
24
kidney
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
304
AMP
227
HPAP
45
T1D
1
ITG
Genome assembly (visualization)
325
hg19
308
GRCh38
Lab
304
AMP-T2D consortium
227
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
1
ITG
Audit category:
38
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
May, 2021
organ_slims!
vasculature
vein
BIOSAMPLE
ASSAY
577 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
31
1
Langerhans cell
85
pancreatic beta cell
21
12
13
16
1
exocrine cell
39
pancreatic ductal cell
4
10
13
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