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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
243
total RNA-seq
151
single cell RNA-seq
17
pCHi-C
10
Hi-C
9
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
Assay category
396
Transcription
244
DNA binding
DNA accessibility
16
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
190
May, 2021
76
February, 2023
May, 2022
59
September, 2018
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
41
August, 2017
24
October, 2019
23
July, 2019
20
February, 2021
20
June, 2019
6
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
488
bigWig
456
bam
333
fastq
251
tsv
223
bed narrowPeak
98
tagAlign
54
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
19
zippedFastqFolder
10
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
683
Homo sapiens
Biosample type
1862
tissue
683
primary cell
492
cell line
313
in vitro differentiated cells
9
stem cell
Organ
253
epithelium
222
pancreas
28
connective tissue
26
vasculature
23
blood vessel
21
kidney
17
vein
11
musculature of body
10
brain
10
liver
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
333
AMP
196
T1D
153
HPAP
1
ITG
Genome assembly (visualization)
503
hg19
450
GRCh38
Lab
301
AMP-T2D consortium
228
Kyle Gaulton, UCSD
153
Klaus Kaestner, Upenn
1
ITG
Audit category:
30
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
month_released!
May, 2022
organ_slims!
heart
target.investigated_as!
control
BIOSAMPLE
ASSAY
683 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
7
52
12
1
6
Langerhans cell
52
pancreatic beta cell
7
21
12
1
exocrine cell
39
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