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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
187
single cell RNA-seq
47
WGBS
36
ChIP-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
435
Transcription
DNA accessibility
58
DNA methylation
36
DNA binding
10
3D chromatin structure
Target of assay
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
75
May, 2021
74
May, 2022
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
30
July, 2019
27
September, 2018
20
February, 2021
16
August, 2017
12
June, 2019
November, 2017
6
October, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
285
bam
270
fastq
268
bigWig
257
tsv
93
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
7
bed narrowPeak
7
bigBed narrowPeak
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
bed broadPeak
2
bigBed broadPeak
2
csv
2
tagAlign
Organism
556
Homo sapiens
Biosample type
1667
tissue
556
primary cell
293
cell line
239
in vitro differentiated cells
8
stem cell
Organ
245
epithelium
217
pancreas
23
connective tissue
14
kidney
9
vasculature
8
blood vessel
8
heart
8
liver
7
brain
5
musculature of body
4
vein
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
Project
227
HPAP
216
AMP
112
T1D
1
ITG
Genome assembly (visualization)
284
hg19
258
GRCh38
Lab
227
Klaus Kaestner, Upenn
211
AMP-T2D consortium
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
22
inconsistent ontology term
4
audit script error
assay_slims!
DNA accessibility
month_released!
November, 2017
organ_slims!
pericardium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
556 results
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total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
31
6
1
Langerhans cell
85
monocyte
54
1
1
pancreatic beta cell
21
12
16
6
1
exocrine cell
39
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