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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
237
total RNA-seq
183
single cell RNA-seq
47
WGBS
15
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
1
small RNA-seq
Assay category
421
Transcription
DNA accessibility
267
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
192
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
47
May, 2020
46
July, 2018
41
April, 2018
27
October, 2019
23
July, 2019
19
June, 2019
18
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
480
bigWig
467
bam
346
fastq
243
tsv
217
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
48
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
Organism
769
Homo sapiens
Biosample type
1767
tissue
769
primary cell
631
cell line
272
in vitro differentiated cells
9
stem cell
Organ
315
epithelium
275
pancreas
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
346
AMP
227
HPAP
195
T1D
1
ITG
Genome assembly (visualization)
494
hg19
436
GRCh38
Lab
311
AMP-T2D consortium
230
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
27
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
connective tissue
lymph node
BIOSAMPLE
ASSAY
769 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
DNAme array
small RNA-seq
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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