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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
164
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
164
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
141
May, 2021
76
February, 2023
74
May, 2022
56
September, 2020
48
July, 2018
47
May, 2020
44
September, 2018
43
April, 2018
32
August, 2017
31
July, 2019
20
February, 2021
20
June, 2019
18
October, 2019
6
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
393
bigWig
392
bam
309
fastq
258
tsv
122
bed narrowPeak
93
zippedFastqFolder
53
tagAlign
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
685
Homo sapiens
Biosample type
1982
tissue
685
primary cell
612
cell line
296
in vitro differentiated cells
9
stem cell
Organ
280
epithelium
244
pancreas
27
connective tissue
22
vasculature
19
blood vessel
19
kidney
13
brain
13
vein
9
liver
9
musculature of body
8
heart
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
301
AMP
227
HPAP
156
T1D
1
ITG
Genome assembly (visualization)
409
hg19
358
GRCh38
Lab
276
AMP-T2D consortium
227
Klaus Kaestner, Upenn
181
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
urinary bladder
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
685 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
9
31
1
monocyte
54
44
1
1
Langerhans cell
85
pancreatic beta cell
21
12
9
16
1
exocrine cell
39
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