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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
4
Hi-C
2
total RNA-seq
1
RRBS
1
pCHi-C
Assay category
23
DNA binding
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
18
October, 2019
6
November, 2017
5
July, 2019
1
March, 2020
1
May, 2021
Available data
25
bam
22
bigWig
14
bed narrowPeak
14
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
fastq
2
bed bed3+
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
236
tissue
58
cell line
31
primary cell
Organ
315
epithelium
275
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
30
AMP
1
T1D
Genome assembly (visualization)
25
hg19
16
GRCh38
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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