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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
70
ChIP-seq
47
WGBS
3
Hi-C
1
pCHi-C
Assay category
155
Transcription
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
58
September, 2018
41
May, 2022
38
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
16
September, 2020
6
February, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
May, 2021
Available data
226
fastq
172
bam
160
bigWig
108
tsv
46
bed narrowPeak
41
zippedFastqFolder
3
bedpe bed3+
3
cool
3
hic
Organism
276
Homo sapiens
Biosample type
423
tissue
276
primary cell
72
cell line
3
in vitro differentiated cells
Organ
315
epithelium
275
pancreas
31
connective tissue
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
172
AMP
103
HPAP
1
T1D
Genome assembly (visualization)
163
hg19
160
GRCh38
Lab
172
AMP-T2D consortium
103
Klaus Kaestner, Upenn
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA accessibility
organ_slims!
vasculature
BIOSAMPLE
ASSAY
276 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
31
1
pancreatic beta cell
21
12
13
16
1
pancreatic ductal cell
4
10
13
pancreatic acinar cell
4
12
8
1
pancreatic endocrine cell
23
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