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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
total RNA-seq
77
ChIP-seq
70
single cell RNA-seq
47
WGBS
7
Hi-C
3
RRBS
Assay category
157
Transcription
DNA accessibility
77
DNA binding
50
DNA methylation
7
3D chromatin structure
Target of assay
56
histone
56
histone modification
30
narrow histone mark
26
broad histone mark
18
control
3
RNA binding protein
3
transcription factor
Date released
47
September, 2018
41
May, 2022
37
February, 2023
33
April, 2018
33
July, 2018
26
August, 2017
18
October, 2019
16
September, 2020
6
February, 2021
6
July, 2019
6
November, 2017
5
December, 2019
4
August, 2021
3
August, 2018
3
June, 2019
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
206
fastq
181
bam
164
bigWig
110
tsv
54
bed narrowPeak
41
zippedFastqFolder
16
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
bed bed3+
5
hic
4
bedpe bed3+
4
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
3
cool
2
hdf5
Organism
291
Homo sapiens
Biosample type
291
primary cell
58
cell line
24
in vitro differentiated cells
2
tissue
Organ
315
epithelium
275
pancreas
31
connective tissue
30
vasculature
26
blood vessel
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
188
AMP
103
HPAP
Genome assembly (visualization)
172
hg19
158
GRCh38
Lab
188
AMP-T2D consortium
103
Klaus Kaestner, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA accessibility
organ_slims!
kidney
BIOSAMPLE
ASSAY
291 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
Hi-C
RRBS
primary cell
pancreatic alpha cell
52
13
12
31
1
pancreatic beta cell
21
13
12
16
1
pancreatic ductal cell
4
13
10
pancreatic acinar cell
4
8
12
1
endothelial cell of umbilical vein
17
2
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