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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 279ChIP-seq
  • 247total RNA-seq
  • 187single cell RNA-seq
  • 47WGBS
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2small RNA-seq
  • 1DNAme array
Assay category
  • 436Transcription
  • DNA accessibility
  • 279DNA binding
  • 58DNA methylation
  • 103D chromatin structure
Target of assay
  • 237histone
  • 237histone modification
  • 122broad histone mark
  • 115narrow histone mark
  • 35control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 193May, 2021
  • 76February, 2023
  • 74May, 2022
  • 59September, 2018
  • 56September, 2020
  • 54August, 2017
  • 48July, 2018
  • 47May, 2020
  • 43April, 2018
  • 31July, 2019
  • 31June, 2019
  • 27October, 2019
  • 20February, 2021
  • 9November, 2017
  • 5December, 2019
  • 5May, 2019
  • 4August, 2021
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 3October, 2022
  • 2October, 2018
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
Available data
  • 505bigWig
  • 495bam
  • 349fastq
  • 258tsv
  • 226bed narrowPeak
  • 100tagAlign
  • 93zippedFastqFolder
  • 57bigBed narrowPeak
  • 21bed broadPeak
  • 21bigBed broadPeak
  • 10bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
Organism
  • 800Homo sapiens
Biosample type
  • 2307tissue
  • 800primary cell
  • 631cell line
  • 351in vitro differentiated cells
  • 10stem cell
Organ
  • 315epithelium
  • 275pancreas
  • 31connective tissue
  • 30vasculature
  • 26blood vessel
  • 24kidney
  • 19vein
  • 16brain
  • 13musculature of body
  • 11liver
  • 10heart
  • 4eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 376AMP
  • 227HPAP
  • 196T1D
  • 1ITG
Genome assembly (visualization)
  • 521hg19
  • 460GRCh38
Lab
  • 341AMP-T2D consortium
  • 231Kyle Gaulton, UCSD
  • 227Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 39inconsistent ontology term
  • 4audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
assay_slims!
  • DNA accessibility
BIOSAMPLE
ASSAY

800 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte855411
pancreatic alpha cell135212311
Langerhans cell85
pancreatic beta cell132112161
exocrine cell39
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