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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
911
total RNA-seq
910
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
29
pCHi-C
27
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Assay category
1109
Transcription
910
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
51
December, 2017
47
September, 2023
42
March, 2020
40
May, 2021
40
May, 2024
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
2
March, 2023
1
January, 2018
1
March, 2019
Available data
1549
bam
1435
bigWig
963
tsv
597
bed narrowPeak
377
bigBed narrowPeak
338
fastq
238
tagAlign
156
txt
35
bed broadPeak
31
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2187
Homo sapiens
Biosample type
2187
tissue
752
primary cell
cell line
351
in vitro differentiated cells
10
stem cell
Organ
540
connective tissue
480
adipose tissue
336
liver
303
pancreas
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2129
AMP
47
KPMP
10
T1D
9
LungMap
2
community
Genome assembly (visualization)
1411
GRCh38
1354
hg19
1
hg18
Lab
1998
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
cell line
month_released!
July, 2018
BIOSAMPLE
ASSAY
2197 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
GRO-seq
tissue
adipose tissue
382
2
1
3
liver
167
145
1
1
3
1
1
1
islet of Langerhans
172
71
6
4
3
1
4
kidney
49
27
64
1
1
bone element
84
+ See 149 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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