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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
74
ChIP-seq
6
WGBS
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
74
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
56
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
March, 2020
1
May, 2023
1
October, 2019
Available data
493
bam
475
bigWig
457
tsv
40
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
Organism
538
Homo sapiens
Biosample type
539
tissue
in vitro differentiated cells
31
primary cell
1
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
539
AMP
Genome assembly (visualization)
475
GRCh38
474
hg19
Lab
539
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
organ_slims!
intestine
BIOSAMPLE
ASSAY
539 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
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