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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
741
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
741
DNA binding
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
509
histone modification
508
histone
281
narrow histone mark
227
broad histone mark
157
control
77
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
253
August, 2017
199
October, 2019
193
May, 2020
153
August, 2021
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
May, 2019
64
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
35
March, 2020
27
May, 2022
22
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
4
May, 2023
4
November, 2020
4
September, 2017
3
December, 2019
1
March, 2019
Available data
1518
bam
1432
bigWig
1061
tsv
484
bed narrowPeak
336
fastq
266
bigBed narrowPeak
238
tagAlign
156
txt
35
bed broadPeak
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2116
Homo sapiens
Biosample type
2124
tissue
761
primary cell
571
cell line
330
in vitro differentiated cells
7
stem cell
Organ
535
connective tissue
476
adipose tissue
400
pancreas
333
liver
226
heart
205
brain
149
kidney
146
bone element
71
limb
41
musculature of body
blood vessel
40
nerve
40
vasculature
27
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2058
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1381
GRCh38
1323
hg19
Lab
1927
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
bed bed3+
month_released!
May, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
2124 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
50
6
4
3
1
4
liver
167
142
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
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