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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
872
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
872
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
253
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
80
April, 2019
76
November, 2017
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
14
February, 2023
12
October, 2017
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1662
bam
1548
bigWig
1075
tsv
595
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2270
Homo sapiens
Biosample type
2272
tissue
723
primary cell
573
cell line
351
in vitro differentiated cells
10
stem cell
Organ
538
connective tissue
479
adipose tissue
411
pancreas
336
liver
247
heart
224
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
40
nerve
35
musculature of body
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2206
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1510
GRCh38
1432
hg19
Lab
2075
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
bed broadPeak
month_released!
September, 2020
BIOSAMPLE
ASSAY
2272 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
65
6
4
3
1
4
liver
167
145
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
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