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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
897
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
897
DNA binding
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
186
control
94
transcription factor
28
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
221
October, 2019
193
May, 2020
158
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
31
March, 2020
27
May, 2022
25
February, 2020
19
November, 2019
15
October, 2017
14
February, 2023
13
November, 2018
9
April, 2020
7
December, 2018
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1652
bam
1539
bigWig
1075
tsv
586
bed narrowPeak
368
bigBed narrowPeak
326
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2279
Homo sapiens
Biosample type
2287
tissue
796
primary cell
604
cell line
344
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
420
pancreas
335
liver
244
heart
233
brain
149
kidney
146
bone element
89
blood vessel
89
vasculature
78
limb
46
musculature of body
40
nerve
32
artery
25
eye
13
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2221
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1515
GRCh38
1449
hg19
Lab
2091
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
bedpe bed3+
month_released!
January, 2019
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
2287 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
6
4
1
1
4
liver
167
145
1
3
1
1
1
kidney
49
27
64
1
1
bone element
84
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