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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
933
total RNA-seq
429
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1123
Transcription
DNA accessibility
429
DNA binding
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
193
May, 2020
183
October, 2019
159
August, 2021
118
July, 2018
69
July, 2019
59
May, 2019
56
August, 2017
47
September, 2023
43
April, 2019
40
May, 2021
40
November, 2017
38
March, 2020
24
February, 2020
21
May, 2022
20
May, 2024
20
November, 2019
14
February, 2023
9
April, 2020
8
October, 2018
4
May, 2023
4
November, 2020
3
December, 2019
2
October, 2017
1
March, 2019
Available data
1440
bam
1295
bigWig
1074
tsv
342
bed narrowPeak
fastq
173
bigBed narrowPeak
162
tagAlign
156
txt
25
bed bedMethyl
25
bigBed bedMethyl
22
bed bed3+
15
bed broadPeak
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1711
Homo sapiens
Biosample type
1712
tissue
362
primary cell
193
cell line
186
in vitro differentiated cells
6
stem cell
Organ
479
connective tissue
420
adipose tissue
242
liver
223
pancreas
190
heart
160
brain
146
bone element
139
kidney
54
blood vessel
54
vasculature
44
limb
30
musculature of body
25
eye
24
nerve
18
artery
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1646
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1066
GRCh38
1058
hg19
Lab
1541
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
7
audit script error
assay_slims!
DNA accessibility
files.file_type!
fastq
organ_slims!
spinal cord
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1712 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
islet of Langerhans
195
35
4
3
1
4
liver
167
63
1
1
2
1
1
kidney
49
17
64
1
1
bone element
84
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