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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
579
ChIP-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
Assay category
917
Transcription
579
DNA binding
DNA accessibility
16
DNA methylation
Target of assay
517
histone modification
516
histone
266
narrow histone mark
250
broad histone mark
62
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
Date released
444
February, 2021
174
August, 2017
170
May, 2020
153
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
55
July, 2019
45
October, 2018
40
May, 2024
38
May, 2021
December, 2017
19
November, 2019
13
November, 2018
9
March, 2020
6
April, 2018
6
January, 2019
6
October, 2017
3
December, 2018
Available data
1614
bam
1512
bigWig
1075
tsv
559
bed narrowPeak
341
bigBed narrowPeak
288
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
csv
1
bedpe
1
tagAlign bed3+
Organism
1506
Homo sapiens
Biosample type
1512
tissue
517
cell line
505
primary cell
212
in vitro differentiated cells
1
stem cell
Organ
475
connective tissue
417
adipose tissue
357
pancreas
205
liver
172
brain
126
heart
62
blood vessel
62
vasculature
58
bone element
53
limb
28
nerve
24
musculature of body
22
kidney
21
artery
14
spleen
1
pituitary gland
Project
1510
AMP
2
T1D
Genome assembly (visualization)
1481
GRCh38
1405
hg19
Lab
1472
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
csv
month_released!
December, 2017
BIOSAMPLE
ASSAY
1512 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
single cell RNA-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
260
29
6
liver
147
53
1
bone tissue
58
left cardiac atrium
40
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