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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
699
total RNA-seq
86
RNA microarray
68
single cell RNA-seq
24
pCHi-C
23
WGBS
14
small RNA-seq
11
Hi-C
9
RRBS
3
snDrop-seq
Assay category
790
DNA binding
781
Transcription
DNA accessibility
32
DNA methylation
11
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
222
October, 2019
193
May, 2020
August, 2021
134
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
63
July, 2019
48
December, 2017
47
September, 2023
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
21
May, 2022
15
October, 2017
12
November, 2018
9
April, 2020
9
February, 2023
7
December, 2018
7
January, 2019
4
May, 2023
3
December, 2019
3
May, 2021
Available data
1284
bam
1191
bigWig
703
tsv
522
bed narrowPeak
324
bigBed narrowPeak
222
tagAlign
152
fastq
93
txt
23
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
7
bed bed3+
7
bedpe bed3+
7
hic
6
csv
1
tagAlign bed3+
Organism
1727
Homo sapiens
Biosample type
1727
tissue
517
cell line
517
primary cell
318
in vitro differentiated cells
10
stem cell
Organ
538
connective tissue
479
adipose tissue
pancreas
336
liver
233
brain
155
heart
146
bone element
91
kidney
84
blood vessel
84
vasculature
78
limb
48
musculature of body
40
nerve
30
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1670
AMP
47
KPMP
9
LungMap
1
T1D
Genome assembly (visualization)
1171
GRCh38
1106
hg19
Lab
1607
AMP-T2D consortium
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
August, 2021
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1727 results
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ChIP-seq
total RNA-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
snDrop-seq
tissue
adipose tissue
2
382
1
3
liver
145
167
1
1
3
1
1
1
bone element
84
kidney
27
56
1
bone tissue
58
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