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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
975
total RNA-seq
879
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1155
Transcription
879
DNA binding
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
277
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
111
May, 2019
82
November, 2017
76
April, 2019
July, 2019
63
October, 2018
47
September, 2023
46
December, 2017
40
May, 2021
38
March, 2020
35
May, 2024
27
May, 2022
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1583
bam
1466
bigWig
1003
tsv
569
bed narrowPeak
357
bigBed narrowPeak
321
fastq
238
tagAlign
156
txt
35
bed broadPeak
26
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2177
Homo sapiens
Biosample type
2185
tissue
759
primary cell
566
cell line
340
in vitro differentiated cells
10
stem cell
Organ
522
connective tissue
463
adipose tissue
408
pancreas
325
liver
218
heart
212
brain
146
bone element
145
kidney
79
blood vessel
79
vasculature
70
limb
39
musculature of body
39
nerve
29
artery
24
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
2119
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1442
GRCh38
1392
hg19
Lab
1993
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
35
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
February, 2020
July, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2185 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
292
69
6
4
3
4
liver
165
144
1
1
3
1
1
kidney
49
26
64
1
bone element
84
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