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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
555
ChIP-seq
179
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
555
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
227
August, 2017
166
May, 2020
159
August, 2021
120
July, 2018
93
October, 2019
78
May, 2019
69
July, 2019
54
November, 2017
53
April, 2019
52
October, 2018
47
September, 2023
44
December, 2017
40
May, 2021
36
March, 2020
27
May, 2022
25
February, 2020
20
May, 2024
20
November, 2019
16
November, 2018
February, 2023
13
October, 2017
9
April, 2020
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1396
bam
1253
bigWig
1071
tsv
303
bed narrowPeak
293
fastq
249
bigBed narrowPeak
152
txt
128
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
20
bed bed3+
20
bed broadPeak
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1935
Homo sapiens
Biosample type
1941
tissue
599
primary cell
541
cell line
281
in vitro differentiated cells
9
stem cell
Organ
521
connective tissue
463
adipose tissue
378
pancreas
290
liver
198
heart
142
bone element
138
kidney
119
brain
69
blood vessel
69
vasculature
63
limb
39
musculature of body
32
nerve
25
artery
21
spleen
19
eye
10
lung
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1882
AMP
47
KPMP
9
LungMap
3
T1D
Genome assembly (visualization)
1246
GRCh38
1206
hg19
Lab
1769
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
month_released!
February, 2023
target.investigated_as!
RNA binding protein
narrow histone mark
BIOSAMPLE
ASSAY
1941 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
287
32
6
4
3
1
4
liver
167
102
1
3
1
1
1
1
kidney
49
16
64
1
1
bone element
84
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