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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
761
ChIP-seq
565
total RNA-seq
174
single cell RNA-seq
23
pCHi-C
19
WGBS
15
Hi-C
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
761
DNA binding
753
Transcription
DNA accessibility
30
DNA methylation
15
3D chromatin structure
Target of assay
542
histone modification
541
histone
294
narrow histone mark
247
broad histone mark
147
control
74
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
223
August, 2017
199
October, 2019
193
May, 2020
152
August, 2021
120
July, 2018
82
November, 2017
80
April, 2019
65
May, 2019
54
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
34
March, 2020
27
May, 2022
20
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
10
February, 2023
9
April, 2020
9
February, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
May, 2023
1
March, 2019
Available data
1090
bam
1011
bigWig
604
tsv
531
bed narrowPeak
314
bigBed narrowPeak
296
fastq
230
tagAlign
68
txt
34
bed broadPeak
24
bed bed3+
22
bed bedMethyl
22
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1584
Homo sapiens
Biosample type
1591
tissue
767
primary cell
573
cell line
350
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
adipose tissue
423
pancreas
336
liver
247
heart
233
brain
149
kidney
bone element
90
blood vessel
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1525
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
987
GRCh38
931
hg19
Lab
1394
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
27
inconsistent control
7
audit script error
5
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
adipose tissue
bone element
vasculature
BIOSAMPLE
ASSAY
1591 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
71
292
6
4
3
1
4
liver
145
167
1
1
3
1
1
1
kidney
27
49
64
1
1
heart left ventricle
35
3
18
1
4
1
1
left cardiac atrium
40
18
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