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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
590
ChIP-seq
178
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1222
Transcription
590
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
608
histone modification
607
histone
318
narrow histone mark
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
206
August, 2017
193
May, 2020
174
October, 2019
157
August, 2021
120
July, 2018
69
July, 2019
55
October, 2018
54
May, 2019
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2017
38
March, 2020
27
May, 2022
22
February, 2020
20
May, 2024
20
November, 2019
16
November, 2018
14
February, 2023
9
April, 2020
7
December, 2018
6
April, 2018
6
September, 2017
5
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
3
January, 2019
1
March, 2019
Available data
1426
bam
1288
bigWig
1070
tsv
335
bed narrowPeak
291
fastq
166
bigBed narrowPeak
162
tagAlign
156
txt
25
bed bedMethyl
25
bigBed bedMethyl
22
bed bed3+
15
bed broadPeak
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1981
Homo sapiens
Biosample type
1985
tissue
676
primary cell
554
cell line
295
in vitro differentiated cells
9
stem cell
Organ
519
connective tissue
460
adipose tissue
382
pancreas
311
liver
190
heart
163
brain
146
bone element
139
kidney
54
blood vessel
54
vasculature
44
limb
32
musculature of body
25
eye
24
nerve
19
spleen
artery
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
1919
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1275
GRCh38
1262
hg19
Lab
1808
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
DNA accessibility
organ_slims!
artery
spinal cord
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
1985 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
57
6
4
3
1
4
liver
167
123
1
3
1
1
1
1
kidney
49
17
64
1
1
bone element
84
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