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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
722
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
722
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
250
August, 2017
195
October, 2019
170
May, 2020
159
August, 2021
120
July, 2018
93
May, 2019
70
November, 2017
69
July, 2019
66
April, 2019
47
September, 2023
45
October, 2018
40
May, 2021
40
May, 2024
37
March, 2020
36
December, 2017
27
May, 2022
25
February, 2020
20
November, 2019
14
February, 2023
13
November, 2018
12
October, 2017
9
April, 2020
6
April, 2018
6
January, 2019
4
May, 2023
3
December, 2018
3
December, 2019
2
November, 2020
1
March, 2019
Available data
1548
bigWig
1495
bam
1074
tsv
595
bed narrowPeak
377
bigBed narrowPeak
269
fastq
186
tagAlign
156
txt
35
bed broadPeak
25
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2112
Homo sapiens
Biosample type
2119
tissue
765
primary cell
548
cell line
314
in vitro differentiated cells
9
stem cell
Organ
515
connective tissue
456
adipose tissue
394
pancreas
290
liver
231
heart
208
brain
146
bone element
143
kidney
74
blood vessel
74
vasculature
61
limb
44
musculature of body
29
nerve
25
artery
25
eye
15
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2053
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1521
GRCh38
1464
hg19
Lab
1924
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
small intestine
target.investigated_as!
control
BIOSAMPLE
ASSAY
2119 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
snDrop-seq
MeRIP-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
292
58
6
4
3
1
2
liver
167
102
1
3
1
1
1
1
kidney
49
21
64
1
1
bone element
84
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