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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
50
total RNA-seq
21
ChIP-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
DNA accessibility
115
Transcription
21
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
control
1
RNA binding protein
1
transcription factor
Date released
58
August, 2021
47
September, 2023
19
April, 2019
8
February, 2021
3
December, 2019
3
July, 2019
3
May, 2023
2
October, 2019
Available data
62
txt
23
bam
22
bigWig
20
bed narrowPeak
18
bigBed narrowPeak
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
143
Homo sapiens
Biosample type
143
tissue
21
primary cell
15
cell line
Organ
515
connective tissue
456
adipose tissue
394
pancreas
290
liver
231
heart
208
brain
146
bone element
143
kidney
74
blood vessel
74
vasculature
61
limb
44
musculature of body
29
nerve
25
artery
25
eye
15
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
47
KPMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
61
Katalin Susztak, Upenn
47
KPMP
35
AMP-T2D consortium
Audit category:
7
audit script error
assay_slims!
DNA accessibility
target.investigated_as!
control
BIOSAMPLE
ASSAY
143 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
small RNA-seq
tissue
kidney
64
49
21
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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