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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
17
single cell RNA-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
66
Transcription
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
60
August, 2021
September, 2023
8
February, 2021
4
July, 2019
3
December, 2019
3
May, 2023
2
March, 2020
Available data
bam
62
txt
51
bigWig
bed narrowPeak
24
bigBed narrowPeak
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
80
Homo sapiens
Biosample type
73
tissue
4
cell line
3
primary cell
Organ
153
pancreas
126
epithelium
106
heart
89
bone element
80
kidney
75
liver
70
connective tissue
45
adipose tissue
40
brain
26
eye
24
musculature of body
16
vasculature
15
blood vessel
10
lung
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
5
hg19
Lab
61
Katalin Susztak, Upenn
17
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bam
bed narrowPeak
month_released!
September, 2023
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
single cell RNA-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
49
17
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
renal cortical epithelial cell
1
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