Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
17
pCHi-C
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
DNA accessibility
20
DNA binding
13
Transcription
Target of assay
50
histone
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
45
May, 2021
10
February, 2023
Available data
bam
101
bigWig
96
tsv
6
fastq
6
txt
2
bed bed3+
Organism
55
Homo sapiens
Biosample type
22
in vitro differentiated cells
21
primary cell
7
tissue
5
cell line
Organ
6
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
28
AMP
27
T1D
Genome assembly (visualization)
5
hg19
Lab
389
AMP-T2D consortium
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
55
Kyle Gaulton, UCSD
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bam
xls
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
55 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
17
5
primary cell
CD8-positive, alpha-beta T cell
3
1
2
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 10 more…
tissue
islet of Langerhans
5
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download