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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
pCHi-C
3
total RNA-seq
1
RNA microarray
Assay category
36
DNA binding
4
DNA methylation
DNA accessibility
3
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2023
Available data
bam
419
bigWig
402
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
46
Homo sapiens
Biosample type
46
tissue
1
in vitro differentiated cells
Organ
159
pancreas
147
heart
127
kidney
126
epithelium
89
bone element
89
liver
71
connective tissue
46
adipose tissue
41
brain
37
musculature of body
26
eye
vasculature
15
blood vessel
10
lung
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
47
AMP-T2D consortium
assay_slims!
DNA accessibility
files.file_type!
bam
organ_slims!
vasculature
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
WGBS
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
small intestine
1
in vitro differentiated cells
white fat cell
1
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