Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
60
August, 2021
47
September, 2023
8
February, 2021
4
July, 2019
3
December, 2019
3
May, 2023
2
March, 2020
Available data
62
txt
bam
24
tsv
21
bigWig
9
bed narrowPeak
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
2
bigBed narrowPeak
1
hic
Organism
127
Homo sapiens
Biosample type
120
tissue
4
cell line
3
primary cell
Organ
145
pancreas
127
kidney
126
epithelium
111
heart
89
bone element
66
liver
27
connective tissue
24
eye
20
brain
18
musculature of body
16
vasculature
15
adipose tissue
15
blood vessel
10
lung
7
limb
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
80
AMP
47
KPMP
Genome assembly (visualization)
5
hg19
Lab
61
Katalin Susztak, Upenn
47
KPMP
17
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bam
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
127 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
64
49
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
renal cortical epithelial cell
1
See all biosamples
Download