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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
total RNA-seq
47
WGBS
20
ChIP-seq
10
MeRIP-seq
9
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
DNA accessibility
67
Transcription
49
DNA methylation
20
DNA binding
9
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
43
February, 2023
41
May, 2022
20
August, 2017
16
September, 2020
10
November, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2022
2
July, 2019
2
November, 2019
1
February, 2020
1
March, 2019
1
May, 2021
1
October, 2019
Available data
bam
572
bigWig
415
tsv
410
fastq
140
bed narrowPeak
59
bigBed narrowPeak
41
zippedFastqFolder
22
bed bed3+
19
tagAlign
12
bed broadPeak
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
158
Homo sapiens
Biosample type
103
primary cell
45
tissue
11
cell line
Organ
159
pancreas
147
heart
127
kidney
126
epithelium
89
bone element
89
liver
71
connective tissue
46
adipose tissue
41
brain
musculature of body
26
eye
16
vasculature
15
blood vessel
10
lung
8
limb
5
gonad
5
ovary
4
artery
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
103
HPAP
49
AMP
7
T1D
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
103
Klaus Kaestner, Upenn
37
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
9
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
bam
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
159 results
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Clear Filters
total RNA-seq
WGBS
ChIP-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
42
31
1
pancreatic beta cell
11
16
1
pancreatic acinar cell
1
tissue
islet of Langerhans
12
20
4
3
1
pancreas
1
1
1
1
body of pancreas
1
cell line
EndoC_BH1
6
1
2
1
Panc1
1
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