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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 293ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 512Transcription
  • DNA accessibility
  • 293DNA binding
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 37control
  • 29transcription factor
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 198August, 2021
  • 128August, 2017
  • 112February, 2021
  • 101May, 2021
  • 100February, 2023
  • 95May, 2022
  • 56September, 2020
  • 47September, 2023
  • 46October, 2019
  • 44March, 2020
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 14November, 2017
  • 10November, 2020
  • 9April, 2020
  • 7October, 2017
  • 5December, 2019
  • 5January, 2018
  • 5March, 2023
  • 4July, 2018
  • 4May, 2023
  • 4October, 2022
  • 3May, 2020
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1December, 2018
  • 1March, 2019
  • 1November, 2018
  • 1September, 2018
Available data
  • bam
  • 2819bigWig
  • 1586tsv
  • 1325bed narrowPeak
  • 1256fastq
  • 801bigBed narrowPeak
  • 398tagAlign
  • 157txt
  • 114bed broadPeak
  • 93zippedFastqFolder
  • 79bigBed broadPeak
  • 64bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1089Homo sapiens
Biosample type
  • 645tissue
  • 305primary cell
  • 78in vitro differentiated cells
  • 61cell line
  • 7stem cell
Organ
  • 159pancreas
  • 147heart
  • 127kidney
  • 126epithelium
  • 89bone element
  • 89liver
  • 71connective tissue
  • 46adipose tissue
  • 41brain
  • 37musculature of body
  • 26eye
  • 16vasculature
  • 15blood vessel
  • 10lung
  • 8limb
  • 5gonad
  • 5ovary
  • 4artery
  • 4skeleton
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 779AMP
  • 227HPAP
  • 47KPMP
  • 29T1D
  • 9LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 125hg19
  • 45GRCh38
  • 5hg18
Lab
  • 533AMP-T2D consortium
  • 227Klaus Kaestner, Upenn
  • 105Kyle Gaulton, UCSD
  • 61Katalin Susztak, Upenn
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 37Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 114inconsistent ontology term
  • 13audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA accessibility
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1096 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
tissue
kidney644911
bone element84
islet of Langerhans41264314
left cardiac atrium4018
liver231203111
primary cell
Langerhans cell85
pancreatic alpha cell42311
exocrine cell39
CD8-positive, alpha-beta T cell3321
pancreatic beta cell11161
in vitro differentiated cells
embryonic stem cell3751
adipocyte1411
cardiomyocytes (cardiac muscle cell)222
immature adipocyte2
lymphocyte of B lineage (iPSC)11
cell line
HepG2199222
EndoC_BH1162321
EndoC-BH1
HEK293T2
MCF-71
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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