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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
21
total RNA-seq
2
RNA microarray
Assay category
64
Transcription
DNA accessibility
Date released
666
February, 2021
400
August, 2017
365
May, 2021
315
November, 2017
241
May, 2020
237
August, 2021
196
October, 2019
168
July, 2018
101
May, 2022
100
February, 2023
94
December, 2017
92
May, 2019
84
July, 2019
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
58
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
14
November, 2020
13
February, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
38
fastq
19
zippedFastqFolder
9
tsv
5
bam
5
bigWig
Organism
66
Homo sapiens
Biosample type
61
primary cell
3
tissue
2
in vitro differentiated cells
Organ
22
epithelium
16
pancreas
5
liver
3
kidney
Project
56
HPAP
10
AMP
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
56
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bed bed3
organ_slims!
brain
BIOSAMPLE
ASSAY
66 results
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Clear Filters
single cell RNA-seq
total RNA-seq
RNA microarray
primary cell
Langerhans cell
40
pancreatic alpha cell
15
hepatocyte
5
pancreatic beta cell
1
tissue
kidney
1
kidney interstitium
1
renal glomerulus
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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