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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
Assay category
200
DNA binding
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
85
October, 2019
82
November, 2017
28
May, 2019
14
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
229
Homo sapiens
Biosample type
223
tissue
6
primary cell
Organ
552
connective tissue
442
adipose tissue
361
pancreas
308
heart
300
liver
229
brain
187
kidney
170
blood vessel
170
epithelium
170
vasculature
147
bone element
92
artery
77
limb
57
musculature of body
40
nerve
28
eye
19
vein
10
embryo
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
229
AMP
Genome assembly (visualization)
171
GRCh38
123
hg19
Lab
229
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bed bedMethyl
fastq
month_released!
January, 2019
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
tissue
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
angular gyrus
15
+ See 70 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
See all biosamples
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