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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
18
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
Assay category
218
DNA binding
DNA accessibility
25
Transcription
3
3D chromatin structure
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
15
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
Available data
209
bam
188
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
27
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
tagAlign bed3+
Organism
248
Homo sapiens
Biosample type
232
tissue
16
primary cell
Organ
767
pancreas
754
liver
647
connective tissue
481
adipose tissue
395
epithelium
308
heart
247
brain
187
kidney
176
vasculature
173
blood vessel
147
bone element
92
artery
77
limb
57
musculature of body
42
blood
42
bodily fluid
40
nerve
37
embryo
28
eye
19
vein
14
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
248
AMP
Genome assembly (visualization)
184
GRCh38
139
hg19
Lab
248
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bed bedMethyl
month_released!
January, 2019
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
tissue
layer of hippocampus
23
brain
20
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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