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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
160
total RNA-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
476
DNA binding
164
Transcription
7
DNA methylation
DNA accessibility
3
3D chromatin structure
Target of assay
283
transcription factor
104
control
86
histone modification
85
histone
82
recombinant protein
53
RNA binding protein
52
narrow histone mark
33
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
673
bam
582
bigWig
461
fastq
399
bed narrowPeak
352
bigBed narrowPeak
165
tsv
86
tagAlign
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
653
Homo sapiens
Biosample type
316
tissue
311
cell line
15
in vitro differentiated cells
11
primary cell
Organ
653
liver
645
connective tissue
630
pancreas
481
adipose tissue
283
epithelium
276
heart
234
brain
172
vasculature
170
blood vessel
146
bone element
92
artery
81
kidney
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
17
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
653
AMP
Genome assembly (visualization)
524
hg19
479
GRCh38
Lab
653
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
bed broadPeak
month_released!
August, 2018
BIOSAMPLE
ASSAY
653 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
145
147
3
1
1
1
1
1
right lobe of liver
10
3
1
2
cell line
HepG2
302
5
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
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