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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
170
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
162
histone modification
161
histone
broad histone mark
73
narrow histone mark
50
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
666
February, 2021
296
November, 2017
289
May, 2021
274
August, 2017
241
May, 2020
228
August, 2021
226
October, 2019
168
July, 2018
101
May, 2022
100
February, 2023
100
July, 2019
79
December, 2017
78
November, 2018
62
May, 2019
60
March, 2020
57
October, 2018
56
September, 2020
49
April, 2018
47
September, 2023
43
April, 2019
42
September, 2018
35
December, 2018
31
February, 2018
29
November, 2019
26
January, 2019
25
February, 2020
23
June, 2019
20
May, 2024
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2017
4
October, 2022
3
June, 2018
1
March, 2019
Available data
229
fastq
223
bam
201
bigWig
89
tsv
76
bed narrowPeak
40
tagAlign
27
bed bed3+
bed broadPeak
14
bigBed narrowPeak
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
273
Homo sapiens
Biosample type
196
tissue
47
in vitro differentiated cells
31
primary cell
Organ
147
pancreas
82
connective tissue
35
adipose tissue
33
liver
20
epithelium
9
musculature of body
Project
274
AMP
Genome assembly (visualization)
188
hg19
185
GRCh38
Lab
274
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
bed broadPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
274 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
26
89
liver
29
3
1
subcutaneous abdominal adipose tissue
15
3
white adipose tissue
12
skeletal muscle tissue
5
4
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in vitro differentiated cells
adipocyte
47
primary cell
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic endocrine cell
8
skeletal muscle myoblast
2
1
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