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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
26
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
13
August, 2017
10
July, 2019
10
June, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
34
bigWig
27
bed narrowPeak
24
bam
15
tagAlign
14
bigBed narrowPeak
bed broadPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
48
Homo sapiens
Biosample type
35
tissue
13
primary cell
Organ
756
pancreas
704
liver
649
connective tissue
482
adipose tissue
392
epithelium
316
heart
234
brain
191
kidney
172
vasculature
170
blood vessel
147
bone element
92
artery
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
17
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
bed broadPeak
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
9
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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