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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
143
ChIP-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
143
DNA binding
7
DNA methylation
4
3D chromatin structure
DNA accessibility
1
DNA sequencing
Target of assay
108
control
26
histone
26
histone modification
13
broad histone mark
13
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
35
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
5
October, 2019
4
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
Available data
673
bam
596
bigWig
461
fastq
bed narrowPeak
352
bigBed narrowPeak
175
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
354
Homo sapiens
Biosample type
252
tissue
93
cell line
8
primary cell
1
in vitro differentiated cells
Organ
633
pancreas
592
connective tissue
476
adipose tissue
349
liver
304
epithelium
202
heart
152
kidney
147
bone element
103
vasculature
101
blood vessel
79
brain
67
artery
34
musculature of body
30
limb
27
eye
23
embryo
16
nerve
11
spleen
10
lung
9
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
354
AMP
Genome assembly (visualization)
188
hg19
164
GRCh38
Lab
317
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
ibed
BIOSAMPLE
ASSAY
354 results
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total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
3
1
1
1
1
1
right lobe of liver
3
3
1
2
islet of Langerhans
4
ovary
1
cell line
HepG2
14
71
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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