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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
163
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
91
histone
91
histone modification
53
broad histone mark
50
control
38
narrow histone mark
23
transcription factor
RNA binding protein
Date released
661
February, 2021
267
August, 2017
240
May, 2021
214
May, 2020
207
August, 2021
168
July, 2018
107
October, 2019
101
May, 2022
100
February, 2023
100
July, 2019
91
November, 2017
57
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
15
November, 2018
14
April, 2019
14
November, 2020
10
December, 2019
9
April, 2020
9
January, 2019
9
October, 2017
8
June, 2019
6
September, 2017
5
December, 2018
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
270
fastq
264
bam
254
bigWig
bed narrowPeak
89
tsv
85
tagAlign
37
bed broadPeak
31
bed bed3+
30
bigBed narrowPeak
11
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
266
Homo sapiens
Biosample type
216
tissue
26
primary cell
25
in vitro differentiated cells
Organ
138
pancreas
79
connective tissue
54
adipose tissue
35
liver
13
musculature of body
12
epithelium
Project
267
AMP
Genome assembly (visualization)
133
hg19
130
GRCh38
Lab
267
AMP-T2D consortium
Audit category:
37
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
23
89
subcutaneous abdominal adipose tissue
35
3
liver
31
3
1
skeletal muscle tissue
9
4
white adipose tissue
12
+ See 2 more…
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
1
in vitro differentiated cells
adipocyte
25
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