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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
24
total RNA-seq
5
Hi-C
4
pCHi-C
Assay category
62
DNA binding
24
Transcription
DNA accessibility
5
3D chromatin structure
Target of assay
33
control
29
histone
29
histone modification
24
narrow histone mark
5
broad histone mark
Date released
653
February, 2021
268
August, 2017
245
May, 2021
214
May, 2020
168
July, 2018
147
August, 2021
101
May, 2022
100
February, 2023
95
October, 2019
93
November, 2017
90
July, 2019
56
September, 2020
55
March, 2020
49
April, 2018
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
22
December, 2017
22
May, 2019
15
November, 2018
14
November, 2020
10
April, 2019
9
April, 2020
9
January, 2019
9
October, 2017
December, 2019
7
June, 2019
6
September, 2017
5
December, 2018
5
January, 2018
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
March, 2019
1
May, 2023
Available data
208
bam
172
bigWig
bed narrowPeak
58
bigBed narrowPeak
49
tagAlign
10
tsv
4
hic
3
bedpe bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bed3+
1
hdf5
1
tagAlign bed3+
Organism
95
Homo sapiens
Biosample type
75
tissue
8
cell line
8
primary cell
4
in vitro differentiated cells
Organ
21
limb
20
eye
15
nerve
13
blood vessel
13
vasculature
12
epithelium
kidney
10
brain
8
pancreas
8
vein
5
artery
4
gonad
4
ovary
3
heart
1
connective tissue
1
liver
1
lymph node
Project
95
AMP
Genome assembly (visualization)
19
hg19
13
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
month_released!
December, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
95 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
21
14
4
tibial nerve
11
4
tibial artery
5
heart
2
1
brain
1
+ See 12 more…
cell line
Panc1
7
1
primary cell
endothelial cell of umbilical vein
7
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
cardiomyocytes (cardiac muscle cell)
1
1
See all biosamples
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