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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
68
ChIP-seq
6
WGBS
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
68
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
56
August, 2017
18
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
420
bam
402
bigWig
389
tsv
36
fastq
8
tagAlign
4
bed bed3+
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
465
Homo sapiens
Biosample type
465
tissue
1
in vitro differentiated cells
Organ
757
pancreas
694
liver
622
connective tissue
466
adipose tissue
380
epithelium
284
heart
230
brain
178
kidney
163
vasculature
161
blood vessel
147
bone element
89
artery
73
limb
51
musculature of body
50
blood
50
bodily fluid
40
nerve
37
embryo
27
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
466
AMP
Genome assembly (visualization)
402
GRCh38
401
hg19
Lab
466
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bedpe
month_released!
July, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
466 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
10
1
white adipose tissue
12
omental fat pad
1
8
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in vitro differentiated cells
white fat cell
1
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