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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
4
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
73
DNA binding
DNA accessibility
4
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
54
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
March, 2020
1
May, 2023
Available data
437
bam
419
bigWig
400
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
479
Homo sapiens
Biosample type
477
tissue
2
primary cell
1
in vitro differentiated cells
Organ
756
liver
755
pancreas
645
connective tissue
480
adipose tissue
386
epithelium
280
heart
202
brain
180
kidney
147
bone element
122
vasculature
119
blood vessel
87
artery
70
limb
60
blood
60
bodily fluid
45
musculature of body
40
nerve
37
embryo
28
eye
20
spleen
18
vein
9
lung
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
spinal cord
1
thymus
Project
480
AMP
Genome assembly (visualization)
418
hg19
417
GRCh38
Lab
480
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bigBed bedMethyl
month_released!
March, 2020
May, 2019
October, 2017
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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